Brandon said:
I found that my egr vacuum is not hooked up - but can't figure out where it goes 
with nothing going to the egr itself, been too long since I looked at the car
I'd really like to get this fixed asap, and the vacuum issue is a start - HEEEELLLLP
-you should have one line that goes from the vacuum tree on the bottom of the intake to the fuel pressure regulator (the little silver thing under the EGR)
-you should then have one line that goes from the same tree and tees off to the EGR solenoid, the TAB (Thermactor Air Bypass) solenoid, and the TAD (Thermactor Air Diverter) solenoid, if you arent running a smog bomp you should have this line connect only to the EGR solenoid, and leave the TAB and TAD plugged into the wiring with no vacuum to them
-the other side of the EGR solenoid should have a line connected to the EGR valve's vacuum connection
-off the large connection on the same vacuum tree you would connect to your power brakes, or to the external vacuum tree (the plastic thing with two bolt holes and a big vacuum line in your pic of parts removed) if you need vacuum for more accesories
-your PCV connects to the large port on the bottom rear of the upper intake, and down to the valve in the rear of the lower intake
-If you have a vapor recovery system it connects through the solenoid valve to the port opposite the PCV connection
Without running out to my truck to double check that should be everything vacuum wise on the motor
Hope it helps.